Amidst busy mornings and snack cravings, I stumbled upon a delightful solution that’s now a regular in my kitchen: High-Protein Bagel Bites. These little gems come together in just 15 minutes, making them the perfect quick snack for anyone looking to ditch fast food. The combination of a crispy exterior with a creamy filling is simply irresistible! Plus, with gluten-free ingredients and a protein boost, you can indulge without any guilt. Whether served as a nourishing breakfast on-the-go or a satisfying midday treat, these bagel bites are sure to impress family and friends alike. Curious about how to whip up these tasty delights and explore their flavor variations? Let’s dive in!

Why Are High-Protein Bagel Bites Amazing?
Quick and Easy: Whip these up in just 15 minutes! Perfect for those busy mornings or unexpected cravings.
Guilt-Free Indulgence: Each bite is low in calories yet high in protein, making them an ideal snack choice.
Flavor Versatility: Experiment with sweet or savory fillings—try adding cinnamon or fresh herbs for a delicious twist!
Crowd-Pleasing: These nuggets are sure to impress your guests, making them a great appetizer or party snack.
Plus, if you love snacks that are nutritious, consider pairing them with a fresh fruit salad or enhancing your breakfast with a Greek yogurt parfait to maintain that balance of health and flavor.
High-Protein Bagel Bites Ingredients
Elevate your snack time with these wholesome ingredients!
For the Dough
- Greek Yogurt – A moist protein powerhouse that helps create a chewy bagel texture; opt for thick coconut yogurt for a dairy-free version.
- Gluten-Free Flour – Forms the base of the dough for structure; an all-purpose blend ensures a smooth texture.
- Protein Powder – Boosts protein content without altering the flavor, but stick with unflavored for best results.
- Baking Powder – Essential for rising; make sure it’s fresh for that light and airy texture.
- Egg (optional) – Use for an egg wash to achieve a beautiful, shiny finish and help the seasoning adhere.
For the Filling
- Cream Cheese – The rich filling that creates a delicious contrast to the crispy outside; keep it chilled for easy handling.
For the Topping
- Everything But The Bagel Seasoning – Adds that quintessential bagel flavor and delightful crunch; don’t be shy with the sprinkle!
These High-Protein Bagel Bites are not just a snack—they’re an adventure for your taste buds!
Step‑by‑Step Instructions for High-Protein Bagel Bites
Step 1: Preheat the Air Fryer
Begin by preheating your air fryer to 350°F (175°C) for about 5 minutes. This temperature ensures that your High-Protein Bagel Bites will crisp up beautifully. While the air fryer heats up, you can prepare your dough and filling, making the process quick and efficient—a perfect way to kick off your snack journey.
Step 2: Combine Dry Ingredients
In a large mixing bowl, whisk together gluten-free flour, protein powder, baking powder, and a pinch of salt until well combined. This blend creates the base for your bagel dough. Ensure there are no lumps for a smooth texture; the right mixture will set the stage for those delicious High-Protein Bagel Bites that everyone will love.
Step 3: Mix in Greek Yogurt
Gradually fold in Greek yogurt to the dry ingredients, using a spatula or your hands as the mixture thickens and becomes sticky. Keep mixing until the dough forms a cohesive ball. This step is crucial, as the yogurt infuses moisture and protein into your bagel bites. Remember, the dough should not be too wet; adjust flour if necessary to maintain stickiness.
Step 4: Portion the Dough
Once your dough is formed, divide it into 10 equal pieces—about 30 grams each. Shape each piece into a ball and place them on a lightly floured surface. This step allows you to control the size of your High-Protein Bagel Bites, ensuring each one is perfectly sized for easy snacking.
Step 5: Create the Filling
Flatten each dough ball slightly and add a generous teaspoon of cream cheese in the center. Then, carefully fold the edges over the cream cheese and pinch to seal tightly. Roll it back into a ball, making sure the filling is completely enclosed. This process will help create the delicious creamy center that complements the crispy exterior of your bagel bites.
Step 6: Prepare for Cooking
Brush each of the sealed bagel bites with a bit of beaten egg or oil to give them a lovely shine after cooking. Sprinkle liberally with Everything But The Bagel seasoning to enhance their flavor. This touch will contribute to the savory essence that makes them so appealing—don’t skimp on the seasoning for that authentic bagel crunch!
Step 7: Air Fry the Bagel Bites
Place the prepared bagel bites in the air fryer basket, ensuring they have enough space between them to allow for even cooking. Air fry for 5-6 minutes, or until they turn a lovely golden brown. Keep an eye on them as they cook, as the exact time may vary based on your air fryer model.
Step 8: Cool Before Serving
Once cooked, carefully remove the High-Protein Bagel Bites from the air fryer and let them cool for a few minutes. This cooling step is essential to prevent burns from the hot filling inside. As they cool, the outer crispiness will stay intact while the filling becomes warm and creamy—an irresistible combination ready to be enjoyed!

What to Serve with High-Protein Bagel Bites
A delightful meal begins when you pair these savory bites with fresh, vibrant sides that enhance their flavors.
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Fresh Fruit Salad: A medley of seasonal fruits adds a refreshing sweetness, balancing the savory flavors of the bagel bites perfectly.
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Creamy Greek Yogurt Parfait: Layer smooth yogurt with crunchy granola and berries for a nutritious addition that’s both rich and satisfying.
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Crunchy Veggie Sticks and Hummus: The crisp, refreshing texture of veggies alongside creamy hummus creates a wholesome snack platter that’s irresistible.
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Rich Protein Smoothie: Pair your bagel bites with a creamy smoothie packed with spinach, banana, and protein for a nourishing breakfast option.
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Herbed Quinoa Salad: This light salad with bright herbs brings a zesty touch that complements the rich flavors of the bagel bites.
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Warm Tomato Soup: The comforting embrace of warm soup pairs beautifully, creating a delightful combo of textures and flavors that will warm your soul.
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Garlic Roasted Broccoli: This crispy, garlicky side adds a savory crunch that blends wonderfully with the creamy filling of the bagel bites.
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Spiced Apple Slices: For a touch of sweetness, sauté apple slices with cinnamon; their warm, aromatic flavor captivates the taste buds.
Expert Tips for High-Protein Bagel Bites
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Yogurt Consistency: Ensure your Greek yogurt isn’t too wet; excess moisture can lead to soggy High-Protein Bagel Bites. If needed, strain the yogurt for best results.
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Mixing Technique: Use your hands to mix the dough once it thickens; this helps achieve the right texture and ensures a well-combined mixture.
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Flavor Experimentation: Don’t be afraid to play with flavors! Try adding spices or mixing in cinnamon and raisins for a unique sweet version of your bagel bites.
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Fresh Baking Powder: Always check your baking powder’s freshness; old powder can prevent proper rising, leading to dense bites that don’t have that delightful airy texture.
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Cooling Time: Allow bagel bites to cool briefly after cooking; this prevents burns from the hot filling and keeps the crispy exterior intact.
How to Store and Freeze High-Protein Bagel Bites
Room Temperature: Store bagel bites in a cool, dry place for up to 2 hours. This is perfect if you’re enjoying them fresh and warm right after cooking.
Fridge: Keep them in an airtight container in the refrigerator for up to 4 days. This will help maintain their taste and texture, making them a perfect quick snack throughout the week.
Freezer: For longer storage, freeze bagel bites in a single layer, then transfer to a freezer-safe bag or container for up to 3 months. This way, you can have a nutritious snack on hand whenever cravings strike!
Reheating: To enjoy from the fridge, reheat in the microwave for about 15 seconds. For frozen bagel bites, air fry at 325°F for 4-5 minutes until heated through for that delightful crispy exterior again!
High-Protein Bagel Bites Variations
Customize your High-Protein Bagel Bites to suit your taste and dietary needs! The possibilities are endless, and each twist brings its own delicious discovery.
- Dairy-Free: Substitute Greek yogurt with thick coconut yogurt for a creamy yet dairy-free option. The flavor stays rich while catering to lactose sensitivities.
- Herbed Dough: Fold in fresh herbs like dill or chives directly into the dough for a savory burst. These subtle flavors elevate your bagels and make them even more delightful!
- Sweet Cinnamon: For a sweeter variation, mix ground cinnamon into the dough and add a dollop of fruit preserves in the center. Cinnamon and fruit create a comforting treat perfect for breakfast.
- Spicy Kick: Add red pepper flakes or diced jalapeños to the filling for a zesty spin on the classic. This fiery flavor infusion will awaken your taste buds and add some excitement!
- Nutty Touch: Incorporate finely chopped nuts or seeds into the dough to add texture and a nutty flavor. Walnuts or sunflower seeds work beautifully, bringing crunch to each bite.
- Lemon Zest: Grate fresh lemon zest into the dough for a refreshing citrus note. It brings brightness that perfectly contrasts with the creamy filling—your palate will thank you!
- Protein Boost: Use flavored protein powder like chocolate or vanilla to enhance flavor while maintaining health benefits. Sweet treats without added sugars? Yes, please!
And if you’re looking for even more recipe inspiration, pair these bagel bites with a delicious Protein Beef Pasta for a meal that keeps you fueled or try these flavors in some Jalapeno Popper Bites for a tasty twist!
Make Ahead Options
These High-Protein Bagel Bites are perfect for meal prep enthusiasts! You can prepare the dough and form the bagel bites up to 24 hours in advance; simply refrigerate them in an airtight container. For the best results, brush with oil and sprinkle the Everything But The Bagel seasoning just before cooking to maintain their crispiness. If you’re looking to prep even further, you can freeze the unbaked bagel bites for up to 3 months—just be sure to place parchment paper between layers to prevent sticking. When ready to enjoy, air fry straight from frozen, adding an extra minute or two to the cooking time for delicious, hot, and protein-packed snacks that save you time and effort during your busy week!

High-Protein Bagel Bites Recipe FAQs
What ingredients should I use for the best texture?
For a chewy and delightful texture, opt for thick Greek yogurt, as it provides the necessary moisture. If you’re looking for a dairy-free option, substitute with thick coconut yogurt. Additionally, using a gluten-free all-purpose flour blend will ensure the dough is smooth and non-gritty, making your High-Protein Bagel Bites a joy to eat!
How long can I store my bagel bites?
You can keep your High-Protein Bagel Bites in an airtight container in the refrigerator for up to 4 days. This makes it super easy to grab a snack during your busy week. If you plan to enjoy them later, you can freeze them for up to 3 months to maintain their deliciousness!
Can I freeze High-Protein Bagel Bites?
Absolutely! To freeze, arrange the bagel bites in a single layer on a baking sheet until solid. Then, transfer them to a freezer-safe bag or container, allowing you to enjoy this tasty treat anytime! When ready to eat, air fry them at 325°F for 4-5 minutes or microwave for about 15 seconds for a quick snack that’s just as wonderful as freshly made.
What should I do if my dough is too sticky?
If you find your dough to be too sticky, simply sprinkle in a little extra gluten-free flour while mixing until it reaches the right consistency. A good tip is to keep your hands lightly floured when handling the dough. This helps shape your bites without making them overly moist or difficult to handle!
Are these bagel bites suitable for those with allergies?
While these High-Protein Bagel Bites are gluten-free, they do contain dairy through Greek yogurt and cream cheese. If you have dairy allergies, I recommend using thick coconut yogurt and a dairy-free cream cheese substitute. Always check the specific brands and ingredients to ensure they meet your dietary needs.

High-Protein Bagel Bites for Quick, Delicious Snacking
Ingredients
Equipment
Method
- Preheat your air fryer to 350°F (175°C) for about 5 minutes.
- In a large mixing bowl, whisk together gluten-free flour, protein powder, baking powder, and a pinch of salt until well combined.
- Gradually fold in Greek yogurt to the dry ingredients until the dough forms a cohesive ball.
- Divide the dough into 10 equal pieces, shape into balls, and place on a floured surface.
- Flatten each dough ball and add a teaspoon of cream cheese in the center, then seal tightly.
- Brush sealed bagel bites with beaten egg or oil, then sprinkle with Everything But The Bagel seasoning.
- Place bagel bites in the air fryer and cook for 5-6 minutes until golden brown.
- Remove from air fryer and let cool for a few minutes before serving.

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